Genetic variability of the Lessepsian migrant mussel Brachidontes pharaonis (Bivalvia: Mytilidae) in Tunisia     

M Antit  J Urra  AN Alagaili  S Farjallah 《African Journal of Marine Science》2018,40(2):211-217

The present study used two mitochondrial markers (16S rRNA and COI) to assess the genetic diversity of a newly founded Lessepsian migrant mussel, Brachidontes pharaonis, in Tunisian waters. The species appears to be restricted to only one population in Rades Harbour, in the northern part of the country. Phylogenetic analyses revealed the monophyly of B. pharaonis in Tunisia. Both molecular markers revealed high genetic variability of the B. pharaonis population. Haplotype networks and demographic analyses confirmed the recent expansion events within this population. Multiple human-mediated introduction events involving several founder populations and intensive population growth rates are probably the main causes of the high polymorphism observed within this invasive mollusc.  相似文献   

南极菌Pseudoalteromonas sp．S-15-13产胞外多糖的研究及其分子鉴定   总被引：2，自引：1，他引：2       下载免费PDF全文

李江  陈靠山  林学政  李光友 《极地研究》2006,17(2):130-135

本文对影响南极细菌S-15-13生长和胞外多糖产量的主要环境因子进行了研究,同时采用16S rDNA序列分析及系统发育分析方法对其进行了分子鉴定。结果表明：菌株S-15-13最佳产糖条件为：培养时间,56h；培养温度,8℃；碳源,1．0%葡萄糖；NaCl浓度,3．0%；pH,6．0-7．0。16S rDNA序列分析和系统发育分析表明,菌株S-15-13属于假交替单胞菌属(Pseudoaltero- monas)。  相似文献   

睡莲类植物ITS nrDNA序列的分子系统发育分析   总被引：6，自引：0，他引：6  

唐先华  张晓艳等 《地球科学》2003,28(1):97-101

睡莲类植物是目前植物分子系统学与进化研究的一个重要类群。核基因组的ITS区是核核糖体（nrDNA)转录单位的一部分。测定和分析了5个属的7种睡莲类植物的核核糖体ITS序列，并与GenBank中提取的相关序列进行了组合分析，初步获得了睡莲类植物的2个ITS系统树，结果也支持现有分子系统学研究中有关金鱼藻处于较原始位置的观点。  相似文献   

Isolation, distribution and evaluation of cytotoxic and antioxidant activity of cultivable actinobacteria from the Oman Sea sediments     

Gozari Mohsen  Bahador Nim  Jassbi Amir Rez  Mortazavi Mohammad Seddiq  Hamzehei Sam  Eftekhar Ebrahim 《海洋学报(英文版)》2019,38(12):84-90

Screening bioactive natural products from bacteria is a determinative step in the drug discovery programs. The present study aim to isolate actinobacteria from the Oman Sea sediments for determining the effects of different culture media and treatments on the yield of the isolation process, and measure the DPPH radical scavenging and Artemia cytotoxic activity of culture extracts of the actinobacterial isolates. A total of 290 actinobacterial isolates were collected from 14 sediment samples. Heat treatment(40.68%) and M_4 medium(29.31%) exhibited the maximum isolation rates of actinobacteria. Streptomyces isolates were dominantly distributed in all of the investigated stations according to 16 S rRNA gene sequencing. The distribution pattern of Streptomyces followed a depth-dependent frequency trend, whereas the members of rare genera including Micromonospora, Nocardia Actinoplanes, Nocardiopsis, Saccharopolyspora and Crossiella were distributed in deeper stations. Approximately,25% of the examined isolates could scavenge 90% of 10~(–4) mol/L DPPH solutions at 1 250 μg/mL final concentration of their ethyl acetate culture extracts. Furthermore, the most potent extracts could scavenge DPPH radicals with IC50 ranges from 356.8 to 566.4 μg/mL. Brine shrimp cytotoxicity tests showed that 38.88% of the examined culture extracts exhibited LC_(50) lower than 1 000 μg/mL against the Artemia cells. Moreover, the most potent culture extracts exhibited LC_(50) range from 335.4 to 534.4 μg/mL. Phylogenetic analysis by 16 S rRNA gene sequence revealed that the OS 005, OS 263 and OS 157 closely related to Streptomyces djakartensis, Streptomyces olivaceus and Nocardiopsis dassonvillei respectively. These results suggested the widespread distribution of the antioxidant and cytotoxic producing actinobacteria in the Oman Sea sediments, which could be considered as promising candidates for the discovery of microbial bioactive compounds.  相似文献   

条斑紫菜SSU 中内含子分析     

李星辰  徐佳杰  林中姮  沈颂东 《海洋科学》2015,39(3):12-18

根据GenBank中已知的条斑紫菜(Porphyra yezoensis)SSU和LSU r RNA基因序列分别设计引物,分别以混合个体和单个个体的基因组DNA以及c DNA为模板进行扩增,测序分析后推测SSU r RNA基因中的内含子转录后加工可能仍被保留,而在LSU r RNA基因上游序列中没有发现内含子。长511bp的内含子位于SSU r RNA基因序列的上游,其插入位点为TCTGGTG-CCAGCAGCC,内含子5′和3′端的核苷酸序列分别为AAC-和-ATGG。该内含子的剪接位点以及保守区P,Q,R,S与I型内含子是不同的。研究发现,在同种紫菜中,不同个体SSU基因中内含子的有无、分布及结构特征是不同的,说明内含子对于分类是不太适合的。但是内含子的长度以及核苷酸序列在种间又具有一定的特异性,可以为红藻种间以及种内亲缘关系较远的亚种和不同地理群的区分和鉴定提供参考。  相似文献   

USE OF RAPD FOR DETECTING AND IDENTIFYING PORPHYRA (BANGIALES, RHODOPHYTA)   总被引：1，自引：0，他引：1  

宋林生  段德麟  李笑红  李晨曦 《中国海洋湖沼学报》1998,(3)

imDUCnONManymolectilarbiologybasedDNAtecboqUesPbodepowrfulmeansforstUdvingofgeneticvariationandphylDgenehcrelationships.AmoleculartecboqUebasedonthePOl}-menachainreaction(PCR)isaneffeChvetoolforraPididentificationofgeneticTnarersknownasRandomAInPlifiedPolymorphicDNA(m)(Wlliamsetal.,l99o;Welsh&McClelland,l99o).Sucheders,derivedfromPrindngsitesrandoInldistributedthIDughoutthegenome,areinheritedinaMendelianPatem.ThesePOlyTnorphismsallowtheanalsisofcomplexgenomeswithoutPriorknoWl…  相似文献   

祁连山疏勒河上游芨芨草根际可培养细菌群落特征研究     

杨秀丽  张宝贵  张威  刘光琇  陈拓  薛林贵 《冰川冻土》2014,36(1):222-229

以疏勒河上游不同海拔芨芨草根际土壤样品为研究对象,研究了不同海拔土样中细菌分布特征及其影响因素. 结果表明：研究区域芨芨草根际土壤可培养细菌种群密度变化范围为1.7×10⁷~10.8×10⁷ CFU·g^-1,平均值为6.4×10⁷ CFU·g^-1,随海拔的升高呈先下降后上升的趋势;可培养细菌数量与土壤全氮、脲酶、蔗糖酶含量呈极显著正相关关系,与有机碳、磷酸酶含量呈显著正相关关系;同时,pH值也是影响细菌数量与多样性的一个重要因素. 通过16S rDNA基因测序及构建系统发育树,研究区域可培养细菌归类为15个属,其中芽孢杆菌属和假单胞菌属为优势菌属.  相似文献   

The Complete Sequence of Mitochondrial COⅡ Gene of Fenneropenaeus chinensis and Its Applicability as a Marker for Phylogenetic Analysis     

YU Shanshan KONG Xiaoyu LI Yulong XU Hui 《中国海洋大学学报(英文版)》2007,6(2):187-192

The complete mitochondrial cytochrome oxidase subunit Ⅱ （COⅡ） gene of Penaeinae shrimp Fenneropenaeus chinensis was cloned and sequenced. The gene is 688 bp in length and codes for 229 amino acids. It shows 83.2%, 87.0% and 83.8% sequence similarity to Marsupenaeus Japonicus, Penaeus monodon and Farfantepenaeus notialis, respectively. The A＋T content of the whole gene and that at the third position of codons are 64.7% and 78.2%, respectively. The phylogenetic relationship between F. chinensis and three other species representing genera Farfanatepenaeus, Marsupenaeus and Penaeus was analyzed. Results showed that the genetic distances among the four taxa ranged from 0.144 0 to 0.200 5, exceeding those estimated with COⅠ and partial 16S rRNA gene sequences among Marsupenaeus, Litopenaeus and Melicertus, and being therefore larger than the value among subgenera. It has been suggested that the COⅡ gene has a faster evolutionary rate than that of the COⅠ gene and partial 16S rRNA gene and could be used for phylogenetic analysis at genus or species level. The results of the present study indicated that Farfantepenaeus, Fenneropenaeus, Marsupenaeus and Penaeus are at a higher phylogenetic level than subgenus, which supports the opinion of the elevation of phylogenetic status of the four subgenera to genus level.  相似文献   

Exopolysaccharide Production by Four Cyanobacterial Isolates and Preliminary Identification of These Isolates   总被引：2，自引：0，他引：2  

ZHANG Yunyi CHI Zhenming LU Weidong 《中国海洋大学学报(英文版)》2007,6(2):147-152

Four marine cyanobacterial isolates, named 104, 109, 113 and 115, from marine water off China＇s coast can release a large amount of exopolysaccharide （EPS） to medium. The effects of different components in medium on EPS production by the four isolates were investigated. Under the optimal condition, the EPS released by isolates 104,109, 113 and 115 reached 7.48 g L^-1, 8.33 g L^-1, 18.26 g L^-1, and 6.78 g L^-1 within 14 d,respectively. Based on the conventional identification methods for cyanobacteria,these isolates were assigned to genus Cyanothece.  相似文献   

帘蛤科4种养殖蛤群体遗传多样性和种间关系的fAFLP分析          下载免费PDF全文

彭永兴  程汉良  夏德全  吴婷婷  孟学平  吉红九  董志国 《海洋科学》2008,32(1):45-51

利用荧光标记扩增片段长度多态性(fAFLP)技术对文蛤(Meretrix meretrix)、青蛤(Cyclina sinensis)、菲律宾蛤仔(Ruditapes philippinarum)和硬壳蛤(Mercenaria mercenaria)4种帘蛤科贝类的群体遗传多样性和种间关系进行了研究。选择EcoRⅠ/MseⅠ进行酶切,使用6个E 3/M 3引物组合进行扩增,共获得1 096个位点,多态位点比率95.1%,片段长度50~456 bp。其中,文蛤、青蛤、菲律宾蛤仔和硬壳蛤分别得到681,715,702和694个位点,相应的多态位点比率为76.8%,81.7%,83.0%和75.1%,得到17个种特异性位点,可作为4物种特征标记。分析了群体遗传相似系数和遗传多样性指数以及种间遗传相似系数。结果表明,硬壳蛤群体遗传相似系数最高(0.670 9),遗传多样性指数最低(0.236 0);菲律宾蛤仔群体遗传相似系数最低(0.592 5),遗传多样性指数最高(0.261 8);根据遗传相似系数采用UPGMA法构建了4物种32个体的聚类图,表明文蛤与菲律宾蛤仔遗传关系最近,青蛤与其他3物种遗传关系较远。  相似文献